4rod_AB : 3D-footprint complex

structure name	HUMAN TFIIB-RELATED FACTOR 2 (BRF2) AND TBP BOUND TO TRNAU1 PROMOTER
reference	Guthertz et al. 'Cell(Cambridge,Mass.)' 163 1375 2015
source	HOMO SAPIENS
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	TATA-box binding protein-like;Cyclin-like;Zinc beta-ribbon;
reference complex	1cdw_A 8ity_V
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4rod_A interface=43,45,195, srsqqrglrrvrdlcrvlqlpptfedtavayyqqayrhsgirAaRlqkkevlvgccvlitcrqhnwpltmgaictllyadldvfsstymqivkllgldvpslclaelvktycssfklfqaspsvpakyvedkekmlsrtmqlvelanetwlvtgrhplpvitaatflawqslqpadrlscslarfcklanvdlpYpassrlqellavllrmaeqlawlrvlrldkrsvvkhigdllqhrqslvrsafrdglllppcmlkspkricpvppvstvtgdenisdseieqylrtpqevrdfqraqa > 4rod_B interface=10,12,40,55,57,63,65,100,102,131,132,146,148,154,156, psgivpqlqNiVstvnlgckldlktialrarnaeynpkrFaavimrireprttaLiFssgkmVcTgakseeqsrlaarkyarvvqklgfpakfldfkiqNmVgscdvkfpirleglvlthqqfssyepelFPgliyrmikprivlLiFvsgkvVlTgakvraeiyeafeniypilkg
interface signature	ARY/NVFLFVTNVFPLFVT

Estimated binding specificities ?

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# IC=13.243 IC/col=0.828 n_of_columns=16

specificity:

A |   3  85  24  24   0   0   4  96   0  85   0  81  24  17   7   4
C |   8   3  24  24  96   0   0   0   0   5   0   3  24  69   3   7
G |  85   5  24  24   0   0   0   0   0   3   0   3  24   3   8  78
T |   0   3  24  24   0  96  92   0  96   3  96   9  24   7  78   7

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updated Fri Dec 15 20:42:08 2023