4rkh_CDEF : 3D-footprint complex

structure name	STRUCTURE OF THE MSL2 CXC DOMAIN BOUND WITH A SPECIFIC MRE SEQUENCE
reference	Zheng et al. 'Genes 28 2652 2014
source	Drosophila melanogaster
experiment	X-ray (resolution=2.00, R-factor=?)
reference complex	4rkh_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4rkh_C interface=5,9,20, kpkcRcgiSsntlttcrnsRcpcyksynscagchcvgcknphkedyv > 4rkh_D interface=8,24, sppkpkcRcgisssntlttcrnsRcpcyksynscagchcvgcknphkedyv > 4rkh_E interface=8,25, sppkpkcRcgisgssntlttcrnsRcpcyksynscagchcvgcknphkedy > 4rkh_F interface=5,8,9,20, kpkcRcgISsntlttcrnsRcpcyksynscagchcvgcknphkedy
interface signature	RSR/RR/RR/RISR

Estimated binding specificities ?

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# IC=11.410 IC/col=0.761 n_of_columns=15

specificity:

A |  96   0   6  96  24   0   0  78  24  24   6   0   6  24   6
C |   0   0   6   0  24  96   0   6  24  24   6   0   6  24   6
G |   0   0  78   0  24   0  96   6  24  24   6  96  78  24   6
T |   0  96   6   0  24   0   0   6  24  24  78   0   6  24  78

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updated Fri Dec 15 20:41:37 2023