4r89_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PAFAN1 - 5' FLAP DNA COMPLEX WITH MANGANASE (Uncharacterized protein)
reference	Gwon et al. 'Genes 28 2276 2014
source	Pseudomonas aeruginosa
experiment	X-ray (resolution=4.00, R-factor=0.227)
sequence family	VRRNUC domain;
reference complex	5y7q_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4r89_A interface=168,176,181,205,241,403,406,512,513,515, pepfyylhnfravlawigeryadllddqerafiaafaelpeasqallvrmvmrkgtlfregklayaeigdtraavqpllalgwvdaqptlelaqlfgllkkdelsqlfrdhlgranlrkdallerlqplfpearrlaewqadfaepvyelrcmalcdrlrlmyfgnlWqdwsefvLadlgIyryesvefsadsrgfrlradvdaYlhlfdcrqrfdlgepleellaglpgepyanpwlegRrvkllfqfaqhcekqrdfdlaqrlyrqsshpgarlrairslergerfaeahalareascapesdaerqglarllprlqgklglprqaraaapeidrldlclafpsepcsvewavrehleepgcavhyvenglinslfgllcweaifaaipgaffhpfhsapAdlHsadfrqrraalfeaclgrledgsyrdaircryrdkfglqspfvywellgeelleqaldclpaahlrawferlledipgnraglpdliqfwpaqrryrmvevkgpgDRlQdnqlrwlqfcrerempvavcyv
interface signature	WLIYRAHDRQ

Estimated binding specificities ?

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# IC=4.131 IC/col=0.344 n_of_columns=12

specificity:

A |  96   0   0  24  24  24  23  24  24  24  24  33
C |   0  96  96  24  24  24  42  24  24  24  24  21
G |   0   0   0  24  24  24  10  24  24  24  24  21
T |   0   0   0  24  24  24  21  24  24  24  24  21

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updated Mon Dec 18 11:15:26 2023