4pba_ABCD : 3D-footprint complex

structure name	THE 5-HYDROXYMETHYLCYTOSINE-SPECIFIC RESTRICTION ENZYME ABASI IN A COMPLEX WITH SUBSTRATE-LIKE DNA
reference	Horton et al. 'Nucleic 42 7947 2014
source	Acinetobacter baumannii
experiment	X-ray (resolution=3.30, R-factor=?)
reference complex	4par_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4pba_A interface=205, assdltdyvirqlgrtknkryeayvvsriihllndftlkfvtqqfvrlsnkkialtdlyfpqlgihievdeghhflrnskmeyslnqideplysisqtesdamreediisitghkifrvnvfknqegqpqnlenihqqidkiieeiktaknklieastfkewnieteynpqtyidlgrisladnvvlkttkdvcncfgysyknyQrggalhpykkdtliwfprlyenkdwintispdgltitekstdetitlkkleewkngpqkrivfarvkdnlssramyrfmglyefqkadlkdgavwkrvksevqtyspke > 4pba_B interface= assdltdyvirqlgrtknkryeayvvsriihllndftlkfvtqqfvrlsnkkialtdlyfpqlgihievdeghhflrnskmeyslnqideplysisqtesdamreediisitghkifrvnvfknqegqpqnlenihqqidkiieeiktaknklieastfkewnieteynpqtyidlgrisladnvvlkttkdvcncfgysyknyQrggalhpykkdtliwfprlyenkdwintispdgltitekstdetitlkkleewkngpqkrivfarvkdnlssramyrfmglyefqkadlkdgavwkrvksevqtyspk > 4pba_C interface=206, kassdltdyvirqlgrtknkryeayvvsriihllndftlkfvtqqfvrlsnkkialtdlyfpqlgihievdeghhflrnskmeyslnqideplysisqtesdamreediisitghkifrvnvfknqegqpqnlenihqqidkiieeiktaknklieastfkewnieteynpqtyidlgrisladnvvlkttkdvcncfgysyknyQrggalhpykkdtliwfprlyenkdwintispdgltitekstdetitlkkleewkngpqkrivfarvkdnlssramyrfmglyefqkadlkdgavwkrvksevqtyspk > 4pba_D interface= assdltdyvirqlgrtknkryeayvvsriihllndftlkfvtqqfvrlsnkkialtdlyfpqlgihievdeghhflrnskmeyslnqideplysisqtesdamreediisitghkifrvnvfknqegqpqnlenihqqidkiieeiktaknklieastfkewnieteynpqtyidlgrisladnvvlkttkdvcncfgysyknyqRggalhpykkdtliwfprlyenkdwintispdgltitekstdetitlkkleewkngpqkrivfarvkdnlssramyrfmglyefqkadlkdgavwkrvksevqtyspk
interface signature	Q/Q/Q/R

Estimated binding specificities ?

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# IC=4.705 IC/col=0.261 n_of_columns=18

specificity:

A |  44   0  96  24  24  24  24  24  24  24  24  24  24  24  24   0   5  13
C |  22   3   0  24  24  24  24  24  24  24  24  24  24  24  24   4   3  17
G |  17   3   0  24  24  24  24  24  24  24  24  24  24  24  24  92   3  20
T |  13  90   0  24  24  24  24  24  24  24  24  24  24  24  24   0  85  46

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updated Fri Dec 15 20:24:52 2023