4nqa_HI : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF LIGANDED HRXR-ALPHA/HLXR-BETA HETERODIMER ON DNA
reference	Gustafsson et al. Nat.Struct.Mol.Biol. 21 277 2014
source	HOMO SAPIENS
experiment	X-ray (resolution=3.10, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4nqa_H interface=27,30,34,35, masftkhicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeerqrgkdrnenevestssanedmpverileaelavepktetndpvtnicqaadkqlftlvewakriphfselplddqvillragwnelliasfshrsiavkdgillatglhvhrnsahsagvgaifdrvltelvskmrdmqmdktelgclraivlfnpdskglsnpaevealrekvyasleayckhkypeqpgrfaklllrlpalrsiglkclehlfffkligdtpidtflmemleap > 4nqa_I interface=4,5,31,34,38,39, kgpAPkmlghelcrvcgdkasgfhynvlscEgcKgffRRsvvrggarryacrgggtcqmdafmrrkcqqcrlrkckeagmreqcvlseeqirkkkirkqqqqesqsqsqspvgpqgssssasgpgaspggseagsqgsgegegvqltaaqelmiqqlvaaqlqcnkrsfsdqpkvtpwplgadpqsrdarqqrfahftelaiisvqeivdfakqvpgflqlgredqiallkastieimlletarrynhetecitflkdftyskddfhraglqvefinpifefsramrrlglddaeyalliainifsadrpnvqepgrvealqqpyveallsytrikrpqdqlrfprmlmklvslrtlssvhseqvfalrlqdkklppllseiwdv
interface signature	EKKR/APEKRR

Estimated binding specificities ?

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# IC=13.158 IC/col=0.822 n_of_columns=16

specificity:

A |  87   0   0  11  12  96  11  24  24  24  92   0   0  11   0  90
C |   3   0   0  11  66   0  77  24  24  24   0   0   0   8  96   3
G |   3  96  96   8   7   0   8  24  24  24   1  96  96  11   0   3
T |   3   0   0  66  11   0   0  24  24  24   3   0   0  66   0   0

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updated Fri Dec 15 20:11:52 2023