4nqa_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF LIGANDED HRXR-ALPHA/HLXR-BETA HETERODIMER ON DNA
reference	Gustafsson et al. Nat.Struct.Mol.Biol. 21 277 2014
source	HOMO SAPIENS
experiment	X-ray (resolution=3.10, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4nqa_A interface=26,29,33,34, asftkhicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeerqrgssanedmpverileaelavepktetyeanmglnpsspndpvtnicqaadkqlftlvewakriphfselplddqvillragwnelliasfshrsiavkdgillatglhvhrnsahsagvgaifdrvltelvskmrdmqmdktelgclraivlfnpdskglsnpaevealrekvyasleayckhkypeqpgrfaklllrlpalrsiglkclehlfffkligdtpidtflmemle > 4nqa_B interface=4,32,35,39,40, kkgPapkmlghelcrvcgdkasgfhynvlscEgcKgffRRsvvrggarryacrgggtcqmdafmrrkcqqcrlrkckeagmreqcvlseeqirkkkirkqqqqesqsqsqspvgpqgsssqgsgegegvqltaaqelmiqqlvaaqlqcnkrsfsdqpkvtpwplgadpqsrdarqqrfahftelaiisvqeivdfakqvpgflqlgredqiallkastieimlletarrynhetecitflkdftyskddfhraglqvefinpifefsramrrlglddaeyalliainifsadrpnvqepgrvealqqpyveallsytrikrpqdqlrfprmlmklvslrtlssvhseqvfalrlqdkklppllseiwd
interface signature	EKKR/PEKRR

Estimated binding specificities ?

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# IC=11.085 IC/col=0.693 n_of_columns=16

specificity:

A |   0   0  80   0   5   6  24  24  24  24   0  24  80   0   5   5
C |   0   0   5  96  80   5  24  24  24  24   0  24   5  96  80   6
G |   0  96   5   0   5   5  24  24  24  24   0  24   5   0   6   5
T |  96   0   6   0   6  80  24  24  24  24  96  24   6   0   5  80

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updated Fri Dec 15 20:11:33 2023