Estimated binding specificities ?

structure nameDISTINCT STRUCTURAL FEATURES OF TFAM DRIVE MITOCHONDRIAL DNA PACKAGING VERSUS TRANSCRIPTIONAL ACTIVATION
(TRANSCRIPTION FACTOR A, MITOCHONDRIAL)
referenceLovely et al. 'Nat 5 3077 2014
sourceHOMO SAPIENS
experimentX-ray (resolution=2.81, R-factor=0.218)
structural superfamilyHMG-box;
sequence familyHMG high mobility group box;
multimeric complexes4nnu_AB 4nod_ABGH
reference complex3tmm_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
contactlogo
# IC=9.764 IC/col=0.542 n_of_columns=18 specificity:   
A |  96   0  13  13  24  24  24  24  24  24  24   0   0   0  96  24  24   0
C |   0   0  16  13  24  24  24  24  24  24  24   0   0   0   0  24  24   0
G |   0  96  13  16  24  24  24  24  24  24  24  96  96  96   0  24  24  96
T |   0   0  54  54  24  24  24  24  24  24  24   0   0   0   0  24  24   0
scan!

home
updated Thu Dec 22 01:52:14 2022