4ne1_p : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	HUMAN MHF1 MHF2 DNA COMPLEXES (CENTROMERE PROTEIN X)
reference	Sachpatzidis et al. 'Nat 5 2987 2014
source	HOMO SAPIENS
experiment	X-ray (resolution=6.50, R-factor=0.267)
structural superfamily	Histone-fold;
sequence family	Protein of unknown function DUF2008;
multimeric complexes	4ndy_IKLM 4ndy_QTUV 4ne1_IKf 4ne1_LMj 4ne1_QTUV 4ne1_Wknop 4ne1_hi
redundant complexes	4ndy_L
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4ne1_p interface=4,6,10, sgfRkElvsRllhlhfkddktkvsgdalqlmvellkvfvveaavrgvrqaqaedalrvdvdqlekvlpqllldf

  
  RAETRT--                            +4ne1_p    
                                    +-3 
  --IT--RA                    +-----4 +7k78_E    
                              !     ! 
  ------RT                 +--5     +7wlr_E    
                           !  ! 
  ------RA                 !  !      +6t7a_C    
                 +---------6  +------1 
  ------RT       !         !         +7lyb_G    
                 !         ! 
  ------RT     --7         !         +7lya_E    
                 !         +---------2 
  ------RT       !                   +7zs9_e    
                 ! 
  ------RT       +-------------------1u35_G

home
updated Thu Dec 22 20:32:19 2022