4mtd_ABCD : 3D-footprint complex

structure name	ZINC UPTAKE REGULATOR COMPLEXED WITH ZINC AND DNA
reference	'Plos 12 e1001987 2014
source	Escherichia coli
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4mtd_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4mtd_A interface=42,56,57,58,61,62, tttqellaqaekicaqrnvrltpqrlevlrlmslqdgaisaYdlldllreaepqaKPPtvYRaldflleqgfvhkvestnsyvlchlfdqpthtsamficdrcgavkeecaegvedimhtlaakmgfalrhnvieahglcaacveveac > 4mtd_B interface=43,57,58,59,62,63, ktttqellaqaekicaqrnvrltpqrlevlrlmslqdgaisaYdlldllreaepqaKPPtvYRaldflleqgfvhkvestnsyvlchlfdqpthtsamficdrcgavkeecaegvedimhtlaakmgfalrhnvieahglcaacveveac > 4mtd_C interface=41,55,56,57,60,61, ttqellaqaekicaqrnvrltpqrlevlrlmslqdgaisaYdlldllreaepqaKPPtvYRaldflleqgfvhkvestnsyvlchlfdqpthtsamficdrcgavkeecaegvedimhtlaakmgfalrhnvieahglcaacveveac > 4mtd_D interface=44,58,59,60,63,64, ektttqellaqaekicaqrnvrltpqrlevlrlmslqdgaisaYdlldllreaepqaKPPtvYRaldflleqgfvhkvestnsyvlchlfdqpthtsamficdrcgavkeecaegvedimhtlaakmgfalrhnvieahglcaacveveac
interface signature	YKPPYR/YKPPYR/YKPPYR/YKPPYR

Estimated binding specificities ?

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# IC=20.577 IC/col=1.029 n_of_columns=20

specificity:

A |   2   0  90  54  80   0   0  10   0  96   0  96  86   0  96   6  24  96   0  96
C |   3   0   2  13   4   0   0  11   0   0   0   0   2  32   0   4  24   0  96   0
G |   2  96   2  20   4   0  96   9   0   0   0   0   2   0   0   4  24   0   0   0
T |  89   0   2   9   8  96   0  66  96   0  96   0   6  64   0  82  24   0   0   0

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updated Fri Dec 15 20:07:03 2023