4jqd_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE RESTRICTION-MODIFICATION CONTROLLER PROTEIN C.CSP231I OL OPERATOR COMPLEX
reference	Shevtsov et al. 'Acta 71 398 2015
source	Citrobacter sp. RFL231
experiment	X-ray (resolution=2.75, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	4jcy_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4jqd_E interface=30,32,33,34,36,37,43, mlirrlkdarlragisqeklgvlagideaSaSARmNQyekgkHapdfemanrlakvlkipvsylytpeddlaqiiltwnelneqerkrinfyirkka > 4jqd_F interface=30,32,33,34,36,37,43, mlirrlkdarlragisqeklgvlagideaSaSARmNQyekgkHapdfemanrlakvlkipvsylytpeddlaqiiltwnelneqerkrinfyi
interface signature	SSARNQH/SSARNQH

Estimated binding specificities ?

readout + contact

# IC=11.252 IC/col=0.750 n_of_columns=15

specificity:

A |   0   4  96   8   0  18  24  24  24  24   0   0  12  87   5
C |  96   1   0   0   0  25  24  24  24  24  96   0  20   4   0
G |   0   0   0  88  96   8  24  24  24  24   0   0  16   4  91
T |   0  91   0   0   0  45  24  24  24  24   0  96  48   1   0

scan!

home
updated Fri Dec 15 19:47:22 2023