4hca_A : 3D-footprint complex

structure name	DNA BINDING BY GATA TRANSCRIPTION FACTOR-COMPLEX 1 (Trans-acting T-cell-specific transcription factor GATA-3)
reference	Bates et al. 'Cell 2 1197 2012
source	Homo sapiens
experiment	X-ray (resolution=2.80, R-factor=0.247)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
sequence family	GATA zinc finger;
reference complex	4hc9_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4hca_A interface=14,15,17,27,31,57,58,60,70,74,77,78,95,97, mgrecvncgatstPLwRrdgtghylcNacgLyhkmngqnrplikptscancqttttTLwRrnangdpvcNacgLyyKLhninrpltmkkegiqtRnRkm
interface signature	PLRNLTLRNLKLRR

Estimated binding specificities ?

readout + contact

# IC=7.654 IC/col=0.765 n_of_columns=10

specificity:

A |   8   4  96   6   0  85   6  84  13  19
C |   7   2   0   6  96   3   6   4  13  20
G |   7   2   0   6   0   3  78   4  13  38
T |  74  88   0  78   0   5   6   4  57  19

scan!

home
updated Mon Dec 18 10:28:40 2023