4gcl_ABCD : 3D-footprint complex

structure name	STRUCTURE OF NO-DNA FACTOR
reference	Proc.Natl.Acad.Sci.USA 110 10586 2013
source	Escherichia coli
experiment	X-ray (resolution=2.65, R-factor=?)
structural superfamily	Homeodomain-like;Tetracyclin repressor-like, C-terminal domain;
reference complex	4gck_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4gcl_A interface=26,36,37,38,39,41,42, rnrreeilqslalmlessdgsqritTaklaasvgvSEAAlYRhfpsktrmfdsliefiedslitrinlilkdekdttarlrlivllllgfgernpgltriltghalmfeqdrlqgrinqlferieaqlrqvlrekrmregegyatdetllasqilafcegmlsrfvrsefkyrptddfdarwpliaaqlq > 4gcl_B interface=32,43,44,47, aekqakrnrreeilqslalmlessdgsqritTaklaasvgvsEAalYrhfpsktrmfdsliefiedslitrinlilkdekdttarlrlivllllgfgernpgltriltghalmfeqdrlqgrinqlferieaqlrqvlrekrmregegyatdetllasqilafcegmlsrfvrsefkyrptddfdarwpliaaqlq > 4gcl_C interface=26,36,37,38,39,41,42, rnrreeilqslalmlessdgsqritTaklaasvgvSEAAlYRhfpsktrmfdsliefiedslitrinlilkdekdttarlrlivllllgfgernpgltriltghalmfeqdrlqgrinqlferieaqlrqvlrekrmregegyatdetllasqilafcegmlsrfvrsefkyrptddfdarwpliaaqlq > 4gcl_D interface=25,36,37,40, nrreeilqslalmlessdgsqritTaklaasvgvsEAalYrhfpsktrmfdsliefiedslitrinlilkdekdttarlrlivllllgfgernpgltriltghalmfeqdrlqgrinqlferieaqlrqvlrekrmregegyatdetllasqilafcegmlsrfvrsefkyrptddfdarwpliaaqlq
interface signature	TSEAAYR/TEAY/TSEAAYR/TEAY

Estimated binding specificities ?

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# IC=12.725 IC/col=0.909 n_of_columns=14

specificity:

A |  96   0   0  11  62   0   6  73   0  11  24  96   0   0
C |   0   0   0  11  16   0   3  11  96   7  24   0  96  15
G |   0  96   0  63   7  96   3   7   0  18  24   0   0   0
T |   0   0  96  11  11   0  84   5   0  60  24   0   0  81

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updated Fri Dec 15 19:09:44 2023