4fth_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF NTRC4 DNA-BINDING DOMAIN BOUND TO DOUBLE- STRANDED DNA
reference	Vidangos et al. J.Mol.Biol. 426 3553 2014
source	Aquifex aeolicus
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	4fth_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4fth_A interface=51,52,53,54,56,57,60, lkekswrdlsyllkikelkeakkefekifieeklreydydlkrtaeeigiDLSNlYRkiKslnirvks > 4fth_B interface=45,47,48,50,51, rdlsyllkikelkeakkefekifieeklreydydlkrtaeeigiDlSNlYRkikslnirvk
interface signature	DLSNYRK/DSNYR

Estimated binding specificities ?

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# IC=11.437 IC/col=0.762 n_of_columns=15

specificity:

A |  16   0   6   0   0  75  24  24  24  24   9   0   0  96  96
C |   6   0   6   0  96   9  24  24  24  24  13   0  96   0   0
G |  13   0   6  96   0   6  24  24  24  24   6  96   0   0   0
T |  61  96  78   0   0   6  24  24  24  24  68   0   0   0   0

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updated Fri Dec 15 18:54:26 2023