4fb3_ABE : 3D-footprint complex

structure name	POLYOMAVIRUS T-AG BINDS SYMMETRICAL REPEATS AT THE VIRAL ORIGIN IN AN ASYMMETRICAL MANNER
reference	Schaffhausen et al. J.Virol. 87 13751 2013
source	Mouse polyomavirus
experiment	X-ray (resolution=3.79, R-factor=?)
structural superfamily	Origin of replication-binding domain, RBD-like;
reference complex	4fb3_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4fb3_A interface=17,18,19,20,68, sdfpssltgylshaiySNKTfpaflvystkekckqlydtigkfrpefkclvhyeeggmlffltmtkhRvsavknycsklcsvsflmckavtkpmecyqvvtaapfqlitenkpgl > 4fb3_B interface=17,18,19,20,68, sdfpssltgylshaiySNKTfpaflvystkekckqlydtigkfrpefkclvhyeeggmlffltmtkhRvsavknycsklcsvsflmckavtkpmecyqvvtaapfqlitenkpg > 4fb3_E interface=17,18,19,20,68, sdfpssltgylshaiySNKTfpaflvystkekckqlydtigkfrpefkclvhyeeggmlffltmtkhRvsavknycsklcsvsflmckavtkpmecyqvvtaapfqlitenkpg
interface signature	SNKTR/SNKTR/SNKTR

Estimated binding specificities ?

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# IC=21.009 IC/col=0.955 n_of_columns=22

specificity:

A |   0  75   0   4   0   4  24  24  24   0   0  90   6   3   4   9   0   0  87   0   0   0
C |   0   9   0   3  89  86  24  24  24   0   0   6  90  92  86  75   0   0   6  96   6  96
G |  96   3  96  86   4   3  24  24  24  96  96   0   0   0   3   6  96  96   0   0   4   0
T |   0   9   0   3   3   3  24  24  24   0   0   0   0   1   3   6   0   0   3   0  86   0

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updated Fri Dec 15 18:52:42 2023