4eot_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE MAFA HOMODIMER BOUND TO THE CONSENSUS MARE
reference	Guanga et al. Biochemistry 51 9706 2012
source	Homo sapiens
experiment	X-ray (resolution=2.85, R-factor=?)
structural superfamily	A DNA-binding domain in eukaryotic transcription factors;Leucine zipper domain;
reference complex	4eot_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4eot_A interface=35,39,42,43,47, rfsddqlvsmsvrelnrqlrgfskeevirlkqkrRtlkNrgYAqscRfkrvqqrhilesekcqlqsqveqlklevgrlakerdlykekyekl > 4eot_B interface=34,38,41,42,45,46, fsddqlvsmsvrelnrqlrgfskeevirlkqkrRtlkNrgYAqsCRfkrvqqrhilesekcqlqsqveqlklevgrlakerdlykekyekla
interface signature	RNYAR/RNYACR

Estimated binding specificities ?

readout + contact

# IC=9.805 IC/col=0.754 n_of_columns=13

specificity:

A |  13   0   0  24  24  96   0   0  24  24   0   0  57
C |  16   0  96  24  24   0  96   0  24  24   0  96  13
G |  13  96   0  24  24   0   0   0  24  24  96   0  13
T |  54   0   0  24  24   0   0  96  24  24   0   0  13

scan!

home
updated Fri Dec 15 18:50:58 2023