4egz_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF ARAR(DBD) IN COMPLEX WITH OPERATOR ORR3
reference	Nair et al. 'Nucleic 41 639 2013
source	Bacillus subtilis
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4h0e_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4egz_A interface=43,53,54,58,74, levlfqgplgsefmlpkyaqvkeeisswinqgkilpdqkiptEnelmqqfgvSRhtiRkaigdlvsqgllysvQgggtfva > 4egz_B interface=45,55,56,57,60,76, hhlevlfqgplgsefmlpkyaqvkeeisswinqgkilpdqkiptEnelmqqfgvSRHtiRkaigdlvsqgllysvQgggtfva
interface signature	ESRRQ/ESRHRQ

Estimated binding specificities ?

readout + contact

# IC=8.867 IC/col=0.739 n_of_columns=12

specificity:

A |   0   0   7  24  24  75   0  24   7  66   0  96
C |   0   0   7  24  24   7   0  24   7   7  96   0
G |   0  96   9  24  24   7   0  24  75  14   0   0
T |  96   0  73  24  24   7  96  24   7   9   0   0

scan!

home
updated Fri Dec 15 18:50:48 2023