interface graph thumbnail
legend  pdf

structure namePFV INTEGRASE STRAND TRANSFER COMPLEX (STC-MN*) FOLLOWING REACTION IN CRYSTALLO, AT 3.0 A RESOLUTION.
(Pro-Pol polyprotein)
referenceMaertens et al. 'Embo 31 3020 2012
sourceHuman spumaretrovirus
experimentX-ray (resolution=3.00, R-factor=0.230)
structural superfamilyRibonuclease H-like;
sequence familyIntegrase core domain;
reference complex3oym_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureIRQERP

Estimated binding specificities ?

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# IC=2.534 IC/col=0.634 n_of_columns=4 specificity:   
A |   3   6   4  45
C |   3   6  84  16
G |  85   6   4  19
T |   5  78   4  16
scan!

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updated Mon Dec 18 10:08:12 2023