interface graph thumbnail
legend  pdf

structure namePFV INTEGRASE TARGET CAPTURE COMPLEX (TCC-MN), FREEZE-TRAPPED PRIOR TO STRAND TRANSFER, AT 3.0 A RESOLUTION
(Pro-Pol polyprotein)
referenceMaertens et al. 'Embo 31 3020 2012
sourceHuman spumaretrovirus
experimentX-ray (resolution=3.02, R-factor=0.247)
structural superfamilyRibonuclease H-like;
sequence familyIntegrase core domain;
reference complex3oym_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureIRQERP

Estimated binding specificities ?

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# IC=1.190 IC/col=0.298 n_of_columns=4 specificity:   
A |  18  12  60   8
C |  18  12  12  70
G |  18  60  12  10
T |  42  12  12   8
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updated Mon Dec 18 10:08:01 2023