4aqx_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF I-CREI COMPLEXED WITH ITS TARGET METHYLATED AT POSITION PLUS 2 (IN THE B STRAND) IN THE PRESENCE OF MAGNESIUM
reference	Macmaster et al. J.Biol.Chem. 287 30139 2012
source	CHLAMYDOMONAS REINHARDTII
experiment	X-ray (resolution=2.20, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	1t9i_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4aqx_A interface=21,23,25,27,29,31,32,37,43,45,65,67,69,72,138,139, ntkynkefllylagfvdgdgSiIaQiKpNqSYkfkhQlsltfQvTqktqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld > 4aqx_B interface=21,23,25,27,29,31,32,37,43,45,65,67,69,72,138,139, ntkynkefllylagfvdgdgSiIaQiKpNqSYkfkhQlsltfQvTqktqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld
interface signature	SIQKNSYQQTYRRVKT/SIQKNSYQQTYRRVKT

Estimated binding specificities ?

readout + contact

# IC=23.594 IC/col=1.072 n_of_columns=22

specificity:

A |   0  96  96  72   0   0   0   0   0   0   8  24  24   0  96   0   0   0  16   0   0   0
C |  96   0   0   8  96   0   0   0  96   0  56  24  24   0   0  96   0   0  16   0   0   0
G |   0   0   0   8   0   0  96   0   0   0  16  24  24  96   0   0  96   0  16   0   0  96
T |   0   0   0   8   0  96   0  96   0  96  16  24  24   0   0   0   0  96  48  96  96   0

scan!

home
updated Fri Dec 15 18:32:23 2023