3zqc_A : 3D-footprint complex

structure name	STRUCTURE OF THE TRICHOMONAS VAGINALIS MYB3 DNA-BINDING DOMAIN BOUND TO A PROMOTER SEQUENCE REVEALS A UNIQUE C-TERMINAL BETA-HAIRPIN CONFORMATION (MYB3)
reference	Hsiao et al. 'Nucleic 40 449 2012
source	TRICHOMONAS VAGINALIS
experiment	X-ray (resolution=2.90, R-factor=0.218)
structural superfamily	Homeodomain-like;
sequence family	Myblike DNAbinding domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3zqc_A interface=38,41,42,88,89,92,93,96,97, mkgpfteaeddlireyvkengpqnwpritsflpnrspKqcRErwfnhldpavvkhawtpeedetifrnylklgskwsviaklipgrtDNaiKNrwNSsiskristnsnhkeillpdrs
interface signature	KREDNKNNS

Estimated binding specificities ?

readout + contact

# IC=6.915 IC/col=0.988 n_of_columns=7

specificity:

A |   0  84  96   0   0  60  12
C |   0  12   0  96   0  12  12
G |   0   0   0   0  96  12  12
T |  96   0   0   0   0  12  60

scan!

Dendrogram of similar interfaces ?

matrix format

  
  KTRCECNA----DCNA--KANAHTNTSCTC   L       +-----------------------------1msf_C    
                                         +-1 
  KGRTEC--------NA--KGNA--NTST--       +-2 +-----------------------------1h89_C    
                                       ! ! 
  --------RT--RCET----SA--QAKT--   L --3 +-----------------------------6qec_A    
                                       ! 
  --------RGHCRGRGQA--QGKG------   L   +-----------------------------2glo_A

home
updated Tue Dec 19 08:34:01 2023