interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF NUCLEOSOME CORE PARTICLE CONSISTING OF MOUSE TESTIS SPECIFIC HISTONE VARIANTS H2AA AND H2BA
(HISTONE H2B TYPE 1-A)
referenceKumarevel et al. Biochem.Biophys.Res.Commun. 464 929 2015
sourceMUS MUSCULUS
experimentX-ray (resolution=2.81, R-factor=0.212)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes3x1t_ABCDEFGH 3x1v_ABCDEFGH
redundant complexes3x1v
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ------RA                                         +6t7a_C    
                                    +--------------1 
  ------RT           +--------------3              +7lyb_G    
                     !              ! 
  ------RT         +-5              +--------------1u35_G    
                   ! ! 
  ------RT       +-6 +-----------------------------7lya_E    
                 ! ! 
  ------RT       ! +-----------------------------7zs9_e    
               --7 
  ------RA       !                            +7k78_E    
                 !          +-----------------2 
  ------RT       +----------4                 +7wlr_E    
                            ! 
  RAETRT--                  +------------------4ne1_p    
               

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updated Tue Dec 19 08:31:08 2023