3uvf_B : 3D-footprint complex

structure name	EXPANDING LAGALIDADG ENDONUCLEASE SCAFFOLD DIVERSITY BY RAPIDLY SURVEYING EVOLUTIONARY SEQUENCE SPACE (Intron-encoded DNA endonuclease I-HjeMI)
reference	Scharenberg et al. 'Nucleic 40 4954 2012
source	Trichoderma reesei
experiment	X-ray (resolution=3.00, R-factor=0.285)
structural superfamily	Homing endonucleases;
sequence family	LAGLIDADG endonuclease;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3uvf_B interface=19,21,23,25,28,30,32,36,60,62,67,71,73,151,153,155,157,158,163,165,167,169,171,193,197,199,201,203,205,244, shmdltyaylvglfegdgYfSiTkKgkYlTyElgiElsikdvqliykikdilgvgkvsfRkRneieMvslRiRdknhlknfilpifdkypmlsnkqydylrfkdallsniiysddlpeyarsnesinsvdsiintsyfsawlvgfieaegCfStYkLNkdddYlIaSfDiAqkdgdilisaihkylsfttkiYldkTnCsRlKvTgvrsvknvvkfiqgapvkllgnkklqyklwikqlrkisRysekiqlpsny
interface signature	YSTKYTEERRMRRCSYLNYISDAYTCRKTR

Estimated binding specificities ?

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# IC=18.716 IC/col=0.891 n_of_columns=21

specificity:

A |   0   3  76  65   7  96   0  96  24  24  24  32   0   0   0   0   0   0  36  74   5
C |   0   2  10   7  88   0   0   0  24  24  24  25  96  96   0  96  96   0  60   7   7
G |   0   3   1  15   0   0  96   0  24  24  24  36   0   0   0   0   0   0   0   5  82
T |  96  88   9   9   1   0   0   0  24  24  24   3   0   0  96   0   0  96   0  10   2

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Dendrogram of similar interfaces ?

matrix format

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updated Tue Dec 19 08:18:59 2023