3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

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updated Fri Dec 15 17:15:27 2023

structure name	CRYSTAL STRUCTURE OF NUCLEOSOME CORE PARTICLE ASSEMBLED WITH AN ALPHA- SATELLITE SEQUENCE CONTAINING TWO TTAAA ELEMENTS (NCP-TA2)
reference	Vasudevan et al. 'Nucleic 40 6338 2012
source	XENOPUS LAEVIS
experiment	X-ray (resolution=2.07, R-factor=?)
structural superfamily	Histone-fold;P-loop containing nucleoside triphosphate hydrolases;Chromo domain-like;Homeodomain-like;lambda repressor-like DNA-binding domains;p53-like transcription factors;
reference complex	5o9g_E 5o9g_F 5o9g_G 5x0y_D 5z3u_A 6a5l_e 6ftx_B 6g0l_M 6ir9_e 6iro_A 6nqa_A 6pww_K 6r25_E 6r8y_H 6yov_C 7at8_D 7eg6_A 7egp_S 7nkx_a 7nkx_f 7nky_e 7otq_E 7u0g_M 7unc_a 7und_e 7vdt_B 7xcr_F 7xsx_a 7xzx_N 7xzz_N 7zs9_e 8aag_A 8atf_Q 8bvw_e 8byq_e 8ceo_r 8cww_A 8g57_E 8he5_a 8siy_G 8t9f_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3uta_A interface=2,3,28,46, pHRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirger > 3uta_B interface=25, vlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 3uta_C interface= aktrssraglqfpvgrvhrllrkgNyaervgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk > 3uta_D interface= ktrkesyaiyvykvlkqvhpdtgiSskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak > 3uta_E interface=2,3,4,28,46, pHRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirger > 3uta_F interface=30, krhrkvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 3uta_G interface=29, aktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk > 3uta_H interface= ktrkesyaiyvykvlkqvhpdtgisskaMsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak