interface graph thumbnail
legend  pdf

structure nameRB69 DNA POLYMERASE TERNARY COMPLEX CONTAINING DUPNPP
(DNA polymerase)
referenceKonigsberg et al. 'Protein 21 447 2012
sourceEnterobacteria phage RB69
experimentX-ray (resolution=1.88, R-factor=0.190)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family B, exonuclease do;
reference complex3qex_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureYTKK

Estimated binding specificities ?

contactlogo
# IC=2.295 IC/col=0.287 n_of_columns=8 specificity:   
A |  73   7  24  24  24  24   7  73
C |   7  73  24  24  24  24   7   9
G |   7   9  24  24  24  24   7   7
T |   9   7  24  24  24  24  75   7
scan!

home
updated Mon Dec 18 09:20:27 2023