interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN AN OPEN BINARY COMPLEX WITH DNAM AS TEMPLATING NUCLEOBASE
(DNA polymerase I, thermostable)
referenceDiederichs et al. Nat.Chem.Biol. 8 612 2012
sourceThermus aquaticus
experimentX-ray (resolution=1.95, R-factor=0.162)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family A; Taq polymerase, exonuclease;
reference complex6fbc_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKTRNNYNQH

Estimated binding specificities ?

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# IC=2.728 IC/col=0.682 n_of_columns=4 specificity:   
A |   8   0   8  17
C |   8  96  11  63
G |  72   0  69   8
T |   8   0   8   8
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updated Mon Dec 18 09:13:44 2023