3qym_ACDEFH : 3D-footprint complex

structure name	STRUCTURE OF P63 DNA BINDING DOMAIN IN COMPLEX WITH A 10 BASE PAIR A/T RICH RESPONSE ELEMENT HALF SITE
reference	Herzberg et al. Proc.Natl.Acad.Sci.USA 108 6456 2011
source	Homo sapiens
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	p53-like transcription factors;
reference complex	3qyn_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3qym_A interface=179,180,183, spsntdypgphsfdvsfqtaksatwtystelkklycqiaktcpiqikvmtpppqgavirampvykkaehvtevvkrcpnhelsrefnegqiappshlirvegnshaqyvedpitgrqsvlvpyeppqvgtefttvlynfmcnsscvggmnrrpiliivtletrdgqvlgrrcfearicACpgRdrkadedsi > 3qym_C interface=182,183,186, spsntdypgphsfdvsfqqsstaksatwtystelkklycqiaktcpiqikvmtpppqgavirampvykkaehvtevvkrcpnhelsrefnegqiappshlirvegnshaqyvedpitgrqsvlvpyeppqvgtefttvlynfmcnsscvggmnrrpiliivtletrdgqvlgrrcfearicACpgRdrkadedsi > 3qym_D interface=183,184,187, aspsntdypgphsfdvsfqqsstaksatwtystelkklycqiaktcpiqikvmtpppqgavirampvykkaehvtevvkrcpnhelsrefnegqiappshlirvegnshaqyvedpitgrqsvlvpyeppqvgtefttvlynfmcnsscvggmnrrpiliivtletrdgqvlgrrcfearicACpgRdrkadedsi > 3qym_E interface=183,184,187, aspsntdypgphsfdvsfqqsstaksatwtystelkklycqiaktcpiqikvmtpppqgavirampvykkaehvtevvkrcpnhelsrefnegqiappshlirvegnshaqyvedpitgrqsvlvpyeppqvgtefttvlynfmcnsscvggmnrrpiliivtletrdgqvlgrrcfearicACpgRdrkadedsir > 3qym_F interface=182,183,186, spsntdypgphsfdvsfqqsstaksatwtystelkklycqiaktcpiqikvmtpppqgavirampvykkaehvtevvkrcpnhelsrefnegqiappshlirvegnshaqyvedpitgrqsvlvpyeppqvgtefttvlynfmcnsscvggmnrrpiliivtletrdgqvlgrrcfearicACpgRdrkadedsi > 3qym_H interface=176,177,180, psntdypgphsfdvsfqqsatwtystelkklycqiaktcpiqikvmtpppqgavirampvykkaehvtevvkrcpnhelsrefnegqiappshlirvegnshaqyvedpitgrqsvlvpyeppqvgtefttvlynfmcnsscvggmnrrpiliivtletrdgqvlgrrcfearicACpgRdrkadedsi
interface signature	ACR/ACR/ACR/ACR/ACR/ACR

Estimated binding specificities ?

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# IC=17.933 IC/col=0.598 n_of_columns=30

specificity:

A |   0   0  24  24  24  24  24  65   0  92   2   0  24  24   3  68  24  76   0  91   2   0  24  24  24  24  24  72   0  94
C |   3   0  24  24  24  24  24  14  96   2   0   0  24  24   4  10  24   4  96   1   0   0  24  24  24  24  24   6  96   2
G |   2  96  24  24  24  24  24   5   0   2   2  96  24  24   2  12  24  14   0   2   3  96  24  24  24  24  24  12   0   0
T |  91   0  24  24  24  24  24  12   0   0  92   0  24  24  87   6  24   2   0   2  91   0  24  24  24  24  24   6   0   0

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updated Fri Dec 15 16:25:38 2023