3on0_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE PED208 TRAM-SBMA COMPLEX
reference	Mark Glover et al. 'Nucleic 39 6775 2011
source	Escherichia coli
experiment	X-ray (resolution=2.87, R-factor=?)
structural superfamily	TraM-like;IHF-like DNA-binding proteins;
reference complex	3on0_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3on0_A interface=2, pKiqtyvnnnvyeqitdlvtirkqegieeaslsnvssmllelglrvymiqqekfnqmeynklmlenvsrvramcteilkmsvlnqesiasgnfdyavikpaidkfareqvsiffpddeddq > 3on0_B interface=2,4,6, pKiQtYvnnnvyeqitdlvtirkqegieeaslsnvssmllelglrvymiqqekreggfnqmeynklmlenvsrvramcteilkmsvlnqesiasgnfdyavikpaidkfareqvsiff > 3on0_C interface=2,4, pKiQtyvnnnvyeqitdlvtirkqegieeaslsnvssmllelglrvymiqqekreggfnqmeynklmlenvsrvramcteilkmsvlnqesiasgnfdyavikpaidkfareqvsiff > 3on0_D interface=2,4,6, pKiQtYvnnnvyeqitdlvtirkqegieeaslsnvssmllelglrvfnqmeynklmlenvsrvramcteilkmsvlnqesiasgnfdyavikpaidkfareqvsiff
interface signature	K/KQY/KQ/KQY

Estimated binding specificities ?

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# IC=10.681 IC/col=0.668 n_of_columns=16

specificity:

A |  96   0  96   0  21  24  24  24  24  24  24  24  96   0  96   0
C |   0   0   0   0  21  24  24  24  24  24  24  24   0   0   0   0
G |   0  96   0   0  21  24  24  24  24  24  24  24   0  96   0   0
T |   0   0   0  96  33  24  24  24  24  24  24  24   0   0   0  96

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updated Fri Dec 15 16:19:18 2023