3nm9_DGJ : 3D-footprint complex

structure name	HMGD(M13A)-DNA COMPLEX
reference	Churchill et al. J.Mol.Biol. 403 88 2010
source	DROSOPHILA MELANOGASTER
experiment	X-ray (resolution=2.85, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3nm9_D interface=6,9,11,31,32,35, sdkpkRplSaYalwlnsaresikrenpgikVTevAkrggelwramkdkseweakaakakddydravkefeang > 3nm9_G interface=6,19,31,32,35, sdkpkRplsayalwlnsaResikrenpgikVTevAkrggelwramkdkseweakaakakddydravkefeang > 3nm9_J interface=31,35, sdkpkrplsayalwlnsaresikrenpgikVtevAkrggelwramkdkseweakaakakddydravkefeang
interface signature	RSYVTA/RRVTA/VA

Estimated binding specificities ?

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# IC=8.265 IC/col=0.590 n_of_columns=14

specificity:

A |   0   4  24  24  50  15  94   2   2  24  24  24   0   0
C |  96   2  24  24  12  19   0   2  75  24  24  24  96   0
G |   0  88  24  24  17  12   2   4  17  24  24  24   0  96
T |   0   2  24  24  17  50   0  88   2  24  24  24   0   0

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updated Fri Dec 15 16:16:22 2023