3mva_O : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF HUMAN MTERF1 BOUND TO THE TERMINATION SEQUENCE (Transcription termination factor, mitochondrial)
reference	Yakubovskaya et al. 'Cell(Cambridge,Mass.)' 141 982 2010
source	Homo sapiens
experiment	X-ray (resolution=2.20, R-factor=0.208)
sequence family	mTERF;
redundant complexes	3mvb_O 3n6s_A 3n7q_A 5cky_O 5co0_O 5crj_O 5crk_O
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3mva_O interface=56,58,90,93,97,126,127,130,171,174,175,179,208,211,212,213,216,247,278,281,312,315, edllknlltmgvdidmarkrqpgvfhrmitneqdlkmfllskgaskeviasiisrYpRaitrtpenlskrwdlwrkivtsdleivnileRspEsffRsnnnlnlennikflysvgltrkclcrllTNapRtfsnsldlnkqmveflqaaglslghndpadfvrkiifknpFilIQstkRvkanieflrstfnlnseellvlicgpgaEilDLSndYarrsyanikeklfslgcteeevqkfvlsypDviflaekkfndkidclmeenisisqiienpRvlDssistlksrikelvnagcnlstlnitllswSkkRyeaklkkls
interface signature	YRRERTNRFIQREDLSYDRDSR

Estimated binding specificities ?

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# IC=14.910 IC/col=1.065 n_of_columns=14

specificity:

A |   0   0   0   0  96   0  96  24  12  12   0   0   0   0
C |   0   0   0  96   0   0   0  24  60  60  96   0   0  12
G |   0  96  96   0   0  96   0  24  12  12   0  96  96   0
T |  96   0   0   0   0   0   0  24  12  12   0   0   0  84

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Related DNA sequences reported in the literature ?

site	source	matches (E-value)
term: MTERF1
TGGCAGAGCCC	PubMed	3mva_O(2.81e-14), 5co0_O(1.86e-13), 3mvb_O(7.32e-10), ... (total=5)
GTGTGGCA	PubMed	3mva_O(1.06e-02), 5crk_O(1.06e-02)

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updated Tue Dec 19 07:51:31 2023