interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF SOPB(155-323)-18MER DNA COMPLEX, I23 FORM
(Protein sopB)
referenceSchumacher et al. 'Nucleic 38 4514 2010
sourceEscherichia coli
experimentX-ray (resolution=2.86, R-factor=0.242)
structural superfamilyKorB DNA-binding domain-like;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSSRKIRR

Estimated binding specificities ?

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# IC=8.472 IC/col=1.059 n_of_columns=8 specificity:   
A |   0   0  13   0  96   0   0  54
C |   0   0  13   0   0  96  96  13
G |   0  96  57  96   0   0   0  16
T |  96   0  13   0   0   0   0  13
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Dendrogram of similar interfaces ?

matrix format

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updated Tue Dec 19 07:50:08 2023