interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE PROTOTYPE FOAMY VIRUS (PFV) INTASOME IN COMPLEX WITH MAGNESIUM
(INTEGRASE)
referenceCherepanov et al. Nature 464 232 2010
sourceHUMAN SPUMARETROVIRUS
experimentX-ray (resolution=2.88, R-factor=0.203)
structural superfamilyRibonuclease H-like;
sequence familyIntegrase core domain;
reference complex3oym_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureIRQERP

Estimated binding specificities ?

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# IC=2.483 IC/col=0.621 n_of_columns=4 specificity:   
A |  16   8  85   2
C |  16   8   3  88
G |  19  70   3   2
T |  45  10   5   4
scan!

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updated Mon Dec 18 08:21:02 2023