3l1p_AB : 3D-footprint complex

structure name	POU PROTEIN:DNA COMPLEX
reference	Vahokoski et al. 'Nat.Cell 15 295 2013
source	Mus musculus
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;Homeodomain-like;
reference complex	3l1p_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3l1p_A interface=27,43,44,45,46,48,49,55,59,94,136,140,143, dmkalqkeleqfakllkqkritlgytQadvgltlgvlfgkvfSQTTiSRfealqLslkNmsklrpllekwveeadnnenlqeisksvqarkrkRtsienrvrwsletmflkspkpslqqithianqlglekdvvrVwfsNrrQkgkr > 3l1p_B interface=41,42,43,46,47,53,91,133,136,137,140, kalqkeleqfakllkqkritlgytqadvgltlgvlfgkvfSQTtiSRfealqLslknmsklrpllekwveeadnnenlqeisksqarkrkRtsienrvrwsletmflkspkpslqqithianqlglekdvvrVwfSNrrQkgkrs
interface signature	QSQTTSRLNRVNQ/SQTSRLRVSNQ

Estimated binding specificities ?

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# IC=18.563 IC/col=1.092 n_of_columns=17

specificity:

A |   6  96   0   6   0   0   5   3   0   0   7   0  96  77  96   3   3
C |  84   0   0   3   0   0  88  79   0   0   3  85   0   3   0   0   3
G |   3   0   0   3   0  96   0   7   0   0   5  11   0   7   0   1  84
T |   3   0  96  84  96   0   3   7  96  96  81   0   0   9   0  92   6

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updated Fri Dec 15 15:35:00 2023