3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

home
updated Fri Dec 15 15:27:44 2023

structure name	STRUCTURAL CHARACTERIZATION OF H3K56Q NUCLEOSOMES AND NUCLEOSOMAL ARRAYS
reference	Lilyestrom et al. Biochim.Biophys.Acta 1799 480 ?
source	XENOPUS LAEVIS
experiment	X-ray (resolution=3.50, R-factor=?)
structural superfamily	Histone-fold;PH domain-like;
reference complex	3kwq_E 5gtc_H 6a5l_d 6a5l_g 6buz_H 6c0w_H 6see_H 6t7a_H 6upk_H 6x59_H 6y5d_H 7d1z_H 7e8d_H 7jzv_N 7k5x_H 7k60_H 7k63_H 7pet_H 7scy_H 7xd0_F 8h0v_h
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3kwq_A interface=3,28,46, phRyrpgtvalreirryqestellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera > 3kwq_B interface= dnIqgitkpairrlarrggvkrisgliYeetrgvlkvflenvirdAvtytehakrktvtamdvvyalkrqgrtlygfgg > 3kwq_C interface= akTrssraglqfpvgrvhrllrkgnyaErvgagapvylaavleylTaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt > 3kwq_D interface= rkEsyaiyvykvlkqvhpdtgisskamSimnsfvndvferiageaSrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak > 3kwq_E interface=2,3,28,46, pHRyrpgtvalreirryqestellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera > 3kwq_F interface=13,26, kvlrdniqgitkPairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 3kwq_G interface= aktrssraglqfPvgrvhrllrkgnYaervgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk > 3kwq_H interface=1, Rkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak