3kk3_AB : 3D-footprint complex

structure name	HIV-1 REVERSE TRANSCRIPTASE-DNA COMPLEX WITH GS-9148 TERMINATED PRIMER
reference	J.Mol.Biol. 397 967 2010 C10 H11 F N5 O5 P
source	HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	DNA/RNA polymerases;Ribonuclease H-like;
reference complex	6or7_B 7ozw_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3kk3_A interface=94,157,183,184,258,265,448,475, pispietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaikkkdstkwrklvdfrelnkrtqdfwevqlgIphpaglkkkksvtvldvgdayfsvpldedfrkytaftipsinnetpgiryqynvlpqgwkgsPaifqssmtkilepfrkqnpdiviyqYMddlyvgsdleigqhrtkieelrqhllrwglttpdkkhqkeppflwmgyelhpdkwtvqpivlpekdswtvndiCklvgklNwasqiypgikvrqlskllrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyarmrgahtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyqlekepivgaetfyvdgaanRetklgkagyvtnrgrqkvvtltdttnQktelqaiylalqdsglevnivtdsqyalgiiqaqpdqseselvnqiieqlikkekvylawvpahkgiggneqvdklvsag > 3kk3_B interface= pietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaikkkdstkwrklvdfrelnkrtqdfwevqlgiphPaglkkkksvtvldvgdayfsvpldedfrkytaftipsinnetpgiryqynvlpqgwkgspaiFqssmtkilepfrkqnpdiviyqymdDLyvgsdleigqhrtkieelrqhllrwglyelhpdkwtvqpivlpekdswtvndiqklvgklnwasqiypgikvrQlskllrGtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyarmrtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyqle
interface signature	IPYMCNRQ/PFDLQG

Estimated binding specificities ?

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# IC=5.131 IC/col=0.302 n_of_columns=17

specificity:

A |   0   0   8  24  11  24  24  24  24  24  24  24  24  24  24  87  11
C |   0   0  69  24  69  24  24  24  24  24  24  24  24  24  24   0  69
G |  96  96   8  24   8  24  24  24  24  24  24  24  24  24  24   0   8
T |   0   0  11  24   8  24  24  24  24  24  24  24  24  24  24   9   8

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updated Fri Dec 15 15:15:06 2023