3g9i_AB : 3D-footprint complex

structure name	GR DNA BINDING DOMAIN: PAL COMPLEX-35
reference	Yamamoto et al. Science 324 407 2009
source	Rattus norvegicus
experiment	X-ray (resolution=1.85, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	3g9m_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3g9i_A interface=25,26,30, shmclvcsdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnlearktkkk > 3g9i_B interface=25,26,30, shmclvcsdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnlearktkkkik
interface signature	KVR/KVR

Estimated binding specificities ?

readout + contact

# IC=3.210 IC/col=0.247 n_of_columns=13

specificity:

A |  16  33  65   4  54  24  25  24  13   3  20  24  11
C |  11  20   9  85  13  24  23  24  14   3  22  21  55
G |  56  21  11   4  15  24  22  24  14  87  24  25  11
T |  13  22  11   3  14  24  26  24  55   3  30  26  19

scan!

home
updated Fri Dec 15 14:29:16 2023