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interface graphfootprint logointerface matrixatomic interactionsinterface residue numbers

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

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updated Mon Dec 18 07:54:10 2023

structure name	DNA POLYMERASE POLC FROM GEOBACILLUS KAUSTOPHILUS COMPLEX WITH DNA, DGTP AND MN (GEOBACILLUS KAUSTOPHILUS DNA POLC)
reference	Christensen et al. Proc.Natl.Acad.Sci.USA 105 20695 2008
source	GEOBACILLUS KAUSTOPHILUS
experiment	X-ray (resolution=2.50, R-factor=0.213)
structural superfamily	PHP domain-like;Nucleic acid-binding proteins;AF1531-like;
sequence family	Bacterial DNA polymerase III alpha sub; PHP domain; OBfold nucleic acid binding domain;
reference complex	3f2b_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3f2c_A interface=442,600,706,735,887, vrrletiveeerrvvvqgyvfdaevselksgrtlltmkitdytnsilvkmfsrdkedaelmsgvkkgmwvkvrgsvqndtfvrdlviiandlneiaanerqdtapegekrvelhlhtpmsqmdavtsvtklieqakkwghpaiavtdhavvqsfpeaysaakkhgmkviygleanivddpfhvtllaqnetglknlfklvslshiqyfhrvpriprsvlvkhrdgllvgsgcdkgelfdnvediarfydflevhppdvykplvkdeemikniirsivalgekldipvvatgnvhylnpedkiyrkilihsqgganplnrhelpdvyfrttnemldcfsflgpekakeivvdntqkiasligdvkpikdelytpriegadeeiremsyrrakeiygdplpklveerlekelksiighgfaviylishklvkkslddgylvgsRgsvgssfvatmteitevnplpphyvcpnckhseffndgsvgsgfdlpdkncprcgtkykkdghdipfetflgfkgdkvpdidlnfsgeyqprahnytkvlfgednvyragtigtvadktaygfvkayasdhnlelrgaeidrlaagctgvkrttgqhPggiivvpdymeiydftpiqypaddtssewrtthfdfhsihdnllkldilghddptvirmlqdlsgidpktiptddpdvmgifssteplgvtpeqimcnvgtigipEfgtrfvrqmleetrpktfselvqisglsHgtdvwlgnaqeliqngtctlsevigcrddimvyliyrglepslafkimesvrkgkgltpefeaemrkhdvpewyidsckkikymfpkahaaayvlmavriayfkvhhpllyyasyftvraedfdldamikgsaairkrieeinakgiqataKekslltvlevalemcergfsfknidlyrsqatefvidgnslippfnaipglgtnvaqaivrareegeflskedlqqrgklsktlleylesrgcldslpdhnqlslf