3cbb_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF HEPATOCYTE NUCLEAR FACTOR 4ALPHA IN COMPLEX WITH DNA: DIABETES GENE PRODUCT
reference	Melikishvili et al.
source	Homo sapiens
experiment	X-ray (resolution=2.00, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	3cbb_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3cbb_A interface=21,24,28,29, alcaicgdratgkhygasscDgcKgffRRsvrknhmyscrfsrqcvvdkdkrnqcrycrlkkcfragmkkeavqne > 3cbb_B interface=21,24,28,29, alcaicgdratgkhygasscDgcKgffRRsvrknhmyscrfsrqcvvdkdkrnqcrycrlkkcfragmkkeavqnerd
interface signature	DKRR/DKRR

Estimated binding specificities ?

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# IC=10.718 IC/col=0.893 n_of_columns=12

specificity:

A |   0   9   0   0  86  24  19   0   0   6   0  79
C |   0  16  91  96   0  24   1   0  10  14  96   9
G |  96   9   1   0   4  24  72  96   0   4   0   4
T |   0  62   4   0   6  24   4   0  86  72   0   4

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updated Fri Dec 15 14:13:54 2023