2yvh_AC : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE OPERATOR-BINDING FORM OF THE MULTI-DRUG BINDING TRANSCRIPTIONAL REPRESSOR CGMR
reference	Shirakihara et al. J.Mol.Biol. 403 174 2010
source	Corynebacterium glutamicum
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	Tetracyclin repressor-like, C-terminal domain;Homeodomain-like;
reference complex	2yvh_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2yvh_A interface=34,35,36,39,40, skkemilrtaidyigeysletlsydslaeatglSKSglIYhfpsrhalllgmhelladdwdkelrditrdpedplerlravvvtlaenvsrpellllidapshpdflnawrtvnhqwipdtddlendahkravylvqlaadglfvhdyihddvlskskrqamletilelip > 2yvh_C interface=34,35,36,39,40, skkemilrtaidyigeysletlsydslaeatglSKSglIYhfpsrhalllgmhelladdwdkelrditrdpedplerlravvvtlaenvsrpellllidapshpdflnawrtvnhqwipdtddlendahkravylvqlaadglfvhdyihddvlskskrqamletilelip
interface signature	SKSIY/SKSIY

Estimated binding specificities ?

readout + contact

# IC=10.380 IC/col=0.865 n_of_columns=12

specificity:

A |  82   6  11   0  64  82   0   0   1  24   0   2
C |   4  68  77   0  10  13  96   0   0  24  96   4
G |   4   9   4  96  13   0   0  96  13  24   0  86
T |   6  13   4   0   9   1   0   0  82  24   0   4

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updated Fri Dec 15 13:06:04 2023