structure name | STRUCTURE OF THE AVRBS3-DNA COMPLEX PROVIDES NEW INSIGHTS INTO THE INITIAL THYMINE-RECOGNITION MECHANISM (AVRBS3) |
reference | Yefimenko et al. 'Acta 69 1707 2013 |
source | XANTHOMONAS CAMPESTRIS |
experiment | X-ray (resolution=2.55, R-factor=0.239) |
structural superfamily | Thiolase-like; |
sequence family | Xanthomonas avirulence protein, Avr/PthA; |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | RDIIIIDDIIDDDD |
Estimated binding specificities ?
readout + contact |
A | 8 78 2 0 0 2 0 89 2 0 2 0 2 89 2 90 2 96 96 C | 8 4 2 0 0 2 0 2 2 0 2 0 3 3 3 2 3 0 0 G | 76 8 90 96 96 2 0 3 89 96 2 0 2 2 2 2 2 0 0 T | 4 6 2 0 0 90 96 2 3 0 90 96 89 2 89 2 89 0 0scan! |
Dendrogram of similar interfaces ?
matrix formatRT--RTDA----IA--ITIAIADCDC--ITIADCDCDC--DC L +--2ypf_A +---1 --IAIANGTG--NGIAIANGDCIAIATARGSADCNG----SA L +--------2 +--4cja_A ! ! ----RADCIA----DC----DCDCIC----IADC----IAIC L --3 +------3ugm_A ! ----RADCDCHTDC------IA--DC--DC------------ L +---------------4osh_B |
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updated Tue Dec 19 07:07:07 2023