interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF THE AEROPYRUM PERNIX ORC1 PROTEIN IN COMPLEX WITH DNA
(CELL DIVISION CONTROL PROTEIN 6 HOMOLOG)
referenceSchuwirth et al. Science 317 1213 2007
sourceAEROPYRUM PERNIX
experimentX-ray (resolution=3.10, R-factor=0.257)
structural superfamilyP-loop containing nucleoside triphosphate hydrolases;
sequence familyCDC6, C terminal;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTTRRSRK

Estimated binding specificities ?

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# IC=8.720 IC/col=0.545 n_of_columns=16 specificity:   
A |   0   5   5  79  24   7   0   0  81  24  24  24  24  24  24   0
C |   6  79  79   5  24   5   0   0   5  24  24  24  24  24  24   0
G |   0   5   7   5  24   5  96  96   5  24  24  24  24  24  24  96
T |  90   7   5   7  24  79   0   0   5  24  24  24  24  24  24   0
scan!

Dendrogram of similar interfaces ?

matrix format



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updated Tue Dec 19 06:57:41 2023