2qsg_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF RAD4-RAD23 BOUND TO A UV-DAMAGED DNA (DNA REPAIR PROTEIN RAD4)
reference	Pavletich et al. Nature 449 570 2007
source	SACCHAROMYCES CEREVISIAE
experiment	X-ray (resolution=3.10, R-factor=0.248)
structural superfamily	Cysteine proteinases;
sequence family	Rad4 transglutaminaselike domain; Rad4 betahairpin domain 3; Rad4 betahairpin domain 1; Rad4 betahairpin domain 2;
reference complex	2qsh_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2qsg_A interface=7,350,372,373,376,424,426,428,430,464,467,469,470,471,474,476,477, darrtsRnvcsneerkrrkyfhmlylvclmvhgfirnewinskrlsrklsnlvpekvfellhpqkdeelplrstrklldglkkcmelwqkhwkitkkydneglymrtwkeiemsannkrkfktlkrsdflravskghgdpdisvqgfvamlracnvnarlimscqppdftnmkidtslngnnaykdmvkypifwcevwdkfskkwitvdpvnlktieqvrlhsklapkgvaccernmlryviaydrkygcrdvtrryaqwmnskvrkrritkddfgekwfrkvitalhhrkrtkiddyedqyffqrdesegipdsvqdlknhpyyvleqdikqtqivkpgckecgylkvHgkvgkvlkvyakrdiadlksaRQwyMngrilktgsrckkvikrtveederlysfedtelyipplasasgeitkNtFgNiEvfaptmipgncclvenpvaikaarflgvefapaVtsFkFERgsTvKPvlsgivvakwlreaietaidgiefi
interface signature	RHRQMNFNEVFFERTKP

Estimated binding specificities ?

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# IC=5.400 IC/col=0.337 n_of_columns=16

specificity:

A |  96   0   0   0  24  24  24  24  24  22  22  24  24  24  24  19
C |   0   0  96   0  24  24  24  24  24  22  22  24  24  24  24  38
G |   0  96   0   0  24  24  24  24  24  22  22  24  24  24  24  19
T |   0   0   0  96  24  24  24  24  24  30  30  24  24  24  24  20

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updated Mon Dec 18 07:12:47 2023