2q2t_A : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

Dendrogram of similar interfaces ?

matrix format

structure name	STRUCTURE OF CHLORELLA VIRUS DNA LIGASE-ADENYLATE BOUND TO A 5' PHOSPHORYLATED NICK (Chlorella virus DNA ligase)
reference	Nandakumar et al. Nat.Struct.Mol.Biol. 14 770 2007
source	Paramecium bursaria Chlorella virus 1
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	DNA ligase/mRNA capping enzyme, catalytic domain;Nucleic acid-binding proteins;
sequence family	ATP dependent DNA ligase domain;
redundant complexes	2q2u_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2q2t_A interface=48,249,285,286, maitkpllaatleniedvqfpclatpkidgirsvkqtqmlsrtfkpiRnsvmnrlltellpegsdgeisiegatfqdttsavmtghkmynakfsyywfdyvtddplkkyidrvedmknyitvhphilehaqvkiiplipveinnitellqyerdvlskgfegvmirkpdgkykfgrstlkegillkmkqfkdaeatiismtalfkntntktkdnfgyskrsthksgkveedvmgsievdydgvvfsigTgfdadqrrdfwqnkesyigkmvkfkyfemgskdcpRFpvfigir

  
  ------------------------------TAFG                             +------2q2t_A    
                                                               +-2 
  --FG--LC----------------------TAFC                           ! !   +--6gdr_A    
                                           +-------------------3 +---1 
  ----MG------------------------SAFC       !                   !     +--6rar_I    
                                         --4                   ! 
  HTFT--------------------------TTFG   L   !                   +--------6p0c_A    
                                           ! 
  --------RTTTKTTTATNTTTFTATFTNT----   L   +----------------------------6bhx_B

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updated Tue Dec 19 06:52:19 2023