2irf_IJKL : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.
reference	Taniguchi et al. 'EMBO 18 5028 1999
source	Mus musculus
experiment	X-ray (resolution=2.20, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	2irf_L
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2irf_I interface=36,76,78,79,82,83, rmrmrpwleeqinsntipglkwlnkekkifqipwmHaarhgwdvekdaplfrnwaihtgkhqpgidkpdpktwkaNfRCamNSlpdieevkdrsikkgnnafrvyrmlp > 2irf_J interface=36,75,76,78,79,80,82,83, rmrmrpwleeqinsntipglkwlnkekkifqipwmHaarhgwdvekdaplfrnwaihtgkhqpgidkpdpktwkANfRCAmNSlpdieevkdrsikkgnnafrvyrmlp > 2irf_K interface=36,76,78,79,82,83, rmrmrpwleeqinsntipglkwlnkekkifqipwmHaarhgwdvekdaplfrnwaihtgkhqpgidkpdpktwkaNfRCamNSlpdieevkdrsikkgnnafrvyrmlp > 2irf_L interface=36,71,75,76,78,79,82,83, rmrmrpwleeqinsntipglkwlnkekkifqipwmHaarhgwdvekdaplfrnwaihtgkhqpgidkpdpKtwkANfRCamNSlpdieevkdrsikkgnnafrvyrmlp
interface signature	HNRCNS/HANRCANS/HNRCNS/HKANRCNS

Estimated binding specificities ?

readout + contact

# IC=18.733 IC/col=0.814 n_of_columns=23

specificity:

A |   3  24  96  24   3   0   0  60  96  93   0  24   0  24  96  24   0   0  12  24  96  60   0
C |  15  24   0  24   3   0   0   3   0   0   0  24   3  24   0  24   0   0   3  24   0  15   0
G |  72  24   0  24  90   0  96  18   0   0  96  24  93  24   0  24  96   0  78  24   0  18  93
T |   6  24   0  24   0  96   0  15   0   3   0  24   0  24   0  24   0  96   3  24   0   3   3

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updated Fri Dec 15 12:03:52 2023