structure name | STRUCTURE OF A COMPLEX OF TANDEM HMG BOXES AND DNA (SEX-DETERMINING REGION ON Y HMGB1) |
source | HOMO SAPIENS, RATTUS RATTUS |
experiment | NMR |
structural superfamily | HMG-box; |
sequence family | HMG high mobility group box; |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | RNFIRNSYKEKRFFCIA |
Estimated binding specificities ?
contact |
A | 6 19 0 96 9 13 24 24 96 92 0 96 96 9 0 0 C | 5 19 0 0 6 71 24 24 0 0 96 0 0 56 0 96 G | 79 52 96 0 5 6 24 24 0 4 0 0 0 3 96 0 T | 6 6 0 0 76 6 24 24 0 0 0 0 0 28 0 0scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: HMG | ||
AACAAAG | PubMed | 2gzk_A(2.32e-04) |
AACAAT | PubMed | 2gzk_A(3.69e-04) |
ATTGTT | PubMed | 2gzk_A(3.69e-04) |
GAACAAT | PubMed | 2gzk_A(3.88e-03) |
Dendrogram of similar interfaces ?
matrix formathome
updated Tue Dec 19 06:30:47 2023