2gxa_ABCDEF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PAPILLOMAVIRUS E1 HEXAMERIC HELICASE WITH SSDNA AND MGADP
reference	Joshua-Tor et al. Nature 442 270 2006
source	Bovine papillomavirus type 1
experiment	X-ray (resolution=3.15, R-factor=?)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
reference complex	2gxa_L
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2gxa_A interface= tekfdfgtmvqwaydhkyaeeskiayeyalaagsdsnaraflatnsqakhvkdcatmvrhylraetqalsmpayikarcklatgegswksiltffnyqnielitfinalklwlkgipkknclafigppntgksmlcnslihflggsvlsfanhkshfwlasladtraalvddathacwryfdtylrnaldgypvsidrkhkaavqikappllvtsnidvqaedrylylhsrvqtfrfeqpctdesgeqpfnitdadwksffvrlwgrldl > 2gxa_B interface= tekfdfgtmvqwaydhkyaeeskiayeyalaagsdsnaraflatnsqakhvkdcatmvrhylraetqalsmpayikarcklatgegswksiltffnyqnielitfinalklwlkgipkknclafigppntgksmlcnslihflggsvlsfanhkshfwlasladtraalvddathacwryfdtylrnaldgypvsidrkhkaavqikappllvtsnidvqaedrylylhsrvqtfrfeqpctdesgeqpfnitdadwksffvrlwgrldl > 2gxa_C interface=200, tekfdfgtmvqwaydhkyaeeskiayeyalaagsdsnaraflatnsqakhvkdcatmvrhylraetqalsmpayikarcklatgegswksiltffnyqnielitfinalklwlkgipkknclafigppntgksmlcnslihflggsvlsfanhkshfwlasladtraalvddathacwryfdtylrnaldgypvsidrkHkaavqikappllvtsnidvqaedrylylhsrvqtfrfeqpctdesgeqpfnitdadwksffvrlwgrldl > 2gxa_D interface=200, tekfdfgtmvqwaydhkyaeeskiayeyalaagsdsnaraflatnsqakhvkdcatmvrhylraetqalsmpayikarcklatgegswksiltffnyqnielitfinalklwlkgipkknclafigppntgksmlcnslihflggsvlsfanhkshfwlasladtraalvddathacwryfdtylrnaldgypvsidrkHkaavqikappllvtsnidvqaedrylylhsrvqtfrfeqpctdesgeqpfnitdadwksffvrlwgrldl > 2gxa_E interface=204, gslqtekfdfgtmvqwaydhkyaeeskiayeyalaagsdsnaraflatnsqakhvkdcatmvrhylraetqalsmpayikarcklatgegswksiltffnyqnielitfinalklwlkgipkknclafigppntgksmlcnslihflggsvlsfanhkshfwlasladtraalvddathacwryfdtylrnaldgypvsidrkHkaavqikappllvtsnidvqaedrylylhsrvqtfrfeqpctdesgeqpfnitdadwksffvrlwgrldl > 2gxa_F interface=200, tekfdfgtmvqwaydhkyaeeskiayeyalaagsdsnaraflatnsqakhvkdcatmvrhylraetqalsmpayikarcklatgegswksiltffnyqnielitfinalklwlkgipkknclafigppntgksmlcnslihflggsvlsfanhkshfwlasladtraalvddathacwryfdtylrnaldgypvsidrkHkaavqikappllvtsnidvqaedrylylhsrvqtfrfeqpctdesgeqpfnitdadwksffvrlwgrldl
interface signature	//H/H/H/H

Estimated binding specificities ?

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# IC=2.674 IC/col=0.669 n_of_columns=4

specificity:

A |   9  11   0   9
C |   9   9   0  11
G |   9   9   0   9
T |  69  67  96  67

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updated Fri Dec 15 11:57:33 2023