2gie_ABCD : 3D-footprint complex

structure name	HINCII BOUND TO COGNATE DNA GTTAAC
reference	Bitinaite et al. J.Biol.Chem. 281 23852 2006
source	Haemophilus influenzae
experiment	X-ray (resolution=2.60, R-factor=?)
structural superfamily	Restriction endonuclease-like;
reference complex	2gig_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2gie_A interface=30,108,109,137,139,140,198,200,202,203,204,206,208, sfikpiyqdinsiligqkvkrpksgtlsgHaagepfeklvykflkenlsdltfkqyeylndlfmknpaiighearyklfnsptllfllsrgkaatenwsienlfeekQNdtadillvkdqfyelldvktrnisksaQaPNiisayklaqtcakmidnkefdlfdinylevdwelngedlvcvstsfaelfksepselYiNwAAAmQiQfhvrdldqgfngtreewaksylkhfvtqaeqraismidkfvkpfkkyil > 2gie_B interface=30,108,135,137,139,140,198,200,202,203,204,206,208, sfikpiyqdinsiligqkvkrpksgtlsgHaagepfeklvykflkenlsdltfkqyeylndlfmknpaiighearyklfnsptllfllsrgkaatenwsienlfeekQndtadillvkdqfyelldvktrniskSaQaPNiisayklaqtcakmidnkefdlfdinylevdwelngedlvcvstsfaelfksepselYiNwAAAmQiQfhvrdldqgfngtreewaksylkhfvtqaeqraismidkfvkpfkkyi > 2gie_C interface=30,108,135,137,139,140,198,200,202,203,204,206,208, sfikpiyqdinsiligqkvkrpksgtlsgHaagepfeklvykflkenlsdltfkqyeylndlfmknpaiighearyklfnsptllfllsrgkaatenwsienlfeekQndtadillvkdqfyelldvktrniskSaQaPNiisayklaqtcakmidnkefdlfdinylevdwelngedlvcvstsfaelfksepselYiNwAAAmQiQfhvrdldqgfngtreewaksylkhfvtqaeqraismidkfvkpfkkyil > 2gie_D interface=30,108,109,136,137,139,140,198,200,203,204,206,208, sfikpiyqdinsiligqkvkrpksgtlsgHaagepfeklvykflkenlsdltfkqyeylndlfmknpaiighearyklfnsptllfllsrgkaatenwsienlfeekQNdtadillvkdqfyelldvktrnisksAQaPNiisayklaqtcakmidnkefdlfdinylevdwelngedlvcvstsfaelfksepselYiNwaAAmQiQfhvrdldqgfngtreewaksylkhfvtqaeqraismidkfvkpfkkyi
interface signature	HQNQPNYNAAAQQ/HQSQPNYNAAAQQ/HQSQPNYNAAAQQ/HQNAQPNYNAAQQ

Estimated binding specificities ?

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# IC=17.849 IC/col=0.892 n_of_columns=20

specificity:

A |   5   0   7   0  96  96   0   1  24  24  24  24   5   0   5   0  96  90   0   5
C |   6   0  10   0   0   0  96  85  24  24  24  24   6   0   5   0   0   0  96  81
G |  80  96   5   0   0   0   0   0  24  24  24  24  85  96   5   0   0   6   0   5
T |   5   0  74  96   0   0   0  10  24  24  24  24   0   0  81  96   0   0   0   5

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updated Fri Dec 15 11:55:56 2023