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structure nameSOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF CHICKEN GATA-1 BOUND TO DNA, NMR, REGULARIZED MEAN STRUCTURE
(ERYTHROID TRANSCRIPTION FACTOR GATA-1)
sourceGALLUS GALLUS
experimentNMR
structural superfamilyGlucocorticoid receptor-like DNA-binding domain;
sequence familyGATA zinc finger;
redundant complexes3gat 1gau 1gat
reference complex1gat_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTLRNLLK

Estimated binding specificities ?

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# IC=2.183 IC/col=0.437 n_of_columns=5 specificity:   
A |  18  60  13   4   6
C |  18  12  13  84   6
G |  18  12  13   4   6
T |  42  12  57   4  78
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: GATA-1
AGATAAPubMed2gat_A(1.19e-07), 3gat_A(1.24e-07), 1gat_A(1.20e-07), ... (total=4)
AGATCTPubMed2gat_A(3.54e-04), 3gat_A(3.54e-04), 1gat_A(3.56e-04), ... (total=4)
TTATCTPubMed2gat_A(1.19e-07), 3gat_A(1.24e-07), 1gat_A(1.20e-07), ... (total=4)
GATAGPubMed2gat_A(1.34e-04), 3gat_A(1.38e-04), 1gat_A(1.35e-04), ... (total=4)
CGATAPubMed2gat_A(1.34e-04), 3gat_A(1.38e-04), 1gat_A(1.35e-04), ... (total=4)
TGATAGPubMed2gat_A(3.54e-04), 3gat_A(3.65e-04), 1gat_A(3.56e-04), ... (total=4)
TGATAAPubMed2gat_A(3.54e-04), 3gat_A(3.65e-04), 1gat_A(3.56e-04), ... (total=4)

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updated Mon Dec 18 06:46:25 2023