2evj_A : 3D-footprint complex

structure name	STRUCTURE OF AN NDT80-DNA COMPLEX (MSE MUTANT MA9C) (NDT80 protein)
reference	Lamoureux et al. Structure 14 555 2006
source	Saccharomyces cerevisiae
experiment	X-ray (resolution=1.89, R-factor=0.174)
structural superfamily	p53-like transcription factors;
sequence family	NDT80 / PhoG like DNAbinding family;
reference complex	1mnn_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2evj_A interface=25,26,79,80,139,140,281, viltqlnedgttsnyfdkrklkiaPRstlqfkvgppfelvrdycpvveshtgrtldlriipridrgfdhideewvgykRNyftlvstfetancdldtflkssfdllvgrlrvqyfaikikaknddddteinlvqhtakRDkgpqfcpsvcplvpsplpkhqtireasnvrnitkmkkydstfylhrdhvnyeeygvdsllfsypedsiqkvaryervqfassisvkkpsqqnkhfslhvilgavvdpdgipydelalkngskgmfvylqemktppliirgRspsnyassq
interface signature	PRRNRDR

Estimated binding specificities ?

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# IC=8.969 IC/col=0.997 n_of_columns=9

specificity:

A |  16   8   0   0   0   0   9   0   7
C |  51   7   0   0   0   0  14  96   7
G |   7   0   0  96   0  96   7   0  82
T |  22  81  96   0  96   0  66   0   0

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updated Mon Dec 18 06:42:15 2023