2evf_A : 3D-footprint complex

structure name	STRUCTURE OF A NDT80-DNA COMPLEX (MSE MUTANT MA6T) (NDT80 protein)
reference	Lamoureux et al. Structure 14 555 2006
source	Saccharomyces cerevisiae
experiment	X-ray (resolution=1.56, R-factor=0.173)
structural superfamily	p53-like transcription factors;
sequence family	NDT80 / PhoG like DNAbinding family;
reference complex	1mnn_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2evf_A interface=25,26,79,80,139,140,281, viltqlnedgttsnyfdkrklkiaPRstlqfkvgppfelvrdycpvveshtgrtldlriipridrgfdhideewvgykRNyftlvstfetancdldtflkssfdllvgrlrvqyfaikikaknddddteinlvqhtakRDkgpqfcpsvcplvpsplpkhqtireasnvrnitkmkkydstfylhrdhvnyeeygvdsllfsypedsiqkvaryervqfassisvkkpsqqnkhfslhvilgavvdpdgipydelalkngskgmfvylqemktppliirgRspsnyassq
interface signature	PRRNRDR

Estimated binding specificities ?

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# IC=9.492 IC/col=1.055 n_of_columns=9

specificity:

A |  10   0  96   0  96   0   0  86  55
C |  53   0   0  96   0  96   0   0  10
G |  12  96   0   0   0   0   0  10  10
T |  21   0   0   0   0   0  96   0  21

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updated Mon Dec 18 06:41:42 2023