2er8_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF LEU3 DNA-BINDING DOMAIN COMPLEXED WITH A 12MER DNA DUPLEX
reference	Fitzgerald et al. Structure 14 725 2006
source	Saccharomyces cerevisiae
experiment	X-ray (resolution=2.85, R-factor=?)
structural superfamily	Zn2/Cys6 DNA-binding domain;
reference complex	2er8_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2er8_A interface=12,13,48, krkfacvecrqQKskcdaherapepctkcakknvpcilkrdfrrtykRarneaiekrfkeltrtltnl > 2er8_B interface=11,12,43, rkfacvecrqQKskcdaherapepctkcakknvpcilkrdfrRtykrarneaiekrfkeltrtltnl
interface signature	QKR/QKR

Estimated binding specificities ?

readout + contact

# IC=4.200 IC/col=0.467 n_of_columns=9

specificity:

A |  16   9   6   4  24  24   2   4  10
C |  45  67   6   4  24  24  88  81  10
G |  19  11  78  84  24  24   2   4  63
T |  16   9   6   4  24  24   4   7  13

scan!

home
updated Fri Dec 15 11:47:52 2023